PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family DBB
Protein Properties Length: 270aa    MW: 29548.1 Da    PI: 6.4216
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07445540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+ ++++ +++fC+ ++  lC +C    H+       H++ 
  XP_004499213.1  4 LCDVCNNHDASFFCTADEAALCLSCDHRVHHAnklaskHNRL 45
                    6******9********************96444778788765 PP

2zf-B_box20.41.1e-065695437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    + C+ +++ ++   C++++  lC+ C +++H+       H
  XP_004499213.1 56 PLCDICQDRRAFVLCKQDRAILCNHCDSSIHSVneftvnH 95
                    68*****************************434555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.291147IPR000315B-box-type zinc finger
PfamPF006434.5E-6346IPR000315B-box-type zinc finger
CDDcd000211.67E-6347No hitNo description
SMARTSM003363.2E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9353100IPR000315B-box-type zinc finger
SMARTSM003362.5E-953100IPR000315B-box-type zinc finger
CDDcd000211.37E-656100No hitNo description
PfamPF006432.0E-55696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKILCDVCNN HDASFFCTAD EAALCLSCDH RVHHANKLAS KHNRLSLLHP SPNLSPLCDI  60
CQDRRAFVLC KQDRAILCNH CDSSIHSVNE FTVNHDRFLL AGVKLSTISS SLTSSSSTNS  120
KSNLVDSSSL IDKSVVVPSS TSIIHNDALE GTVSGGSTIS QYLIETLPGW QVDDFLDSSS  180
VPFAFSKGDD LFDGGIEQNL DSIFPNSNMG IWVPQAPPTP LYSSSQIMMG QSETKKGNNR  240
TRLRDDHDGS VFTVPQISPV SNSKRSRYLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0518989e-74BT051898.1 Medicago truncatula clone MTYF5_F6_F7_F81G-E-22 unknown mRNA.
GenBankBT1430869e-74BT143086.1 Medicago truncatula clone JCVI-FLMt-11J17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499213.10.0PREDICTED: B-box zinc finger protein 21
SwissprotQ9LQZ72e-70BBX21_ARATH; B-box zinc finger protein 21
TrEMBLB7FII11e-135B7FII1_MEDTR; Salt tolerance-like protein
STRINGGLYMA17G37430.21e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.17e-58salt tolerance homolog2